Stem-loop gra-MIR8701

Accession

MI0027677

Description

Gossypium raimondii gra-MIR8701 precursor miRNA

Sequence

accaucguaggucucaucuuucucagccccuuauugcuuccaugacuaaccccaaaguuugcuucgaccuaguggagucuccaaguucuuuuguuaaggugaggagacauuacaaucuagcaaaacaaguuguuguagagagauggcaaagaaguagauuggagcaggcucaagaaaacaacugcgguggucgguuguggugauggaugcaauaAGGGGCUUAGAAAGAUGGGACcuaccguggg
.((((.(((((((((((((((((.(((((((((((((.(((((.(((........((((((((((((.(((((((.((((((....((((.....))))...)))))).)))).((((..(...((((....)))).)..))))..........))).)))))))))))).......((((((((....).)))))))))).))))).))))))))))))).))))))))))))))))).)))).

Structure

a    c                 c             u     g   --------------------aaccccaa            c   -----------------------------------------    a      aagu    u 
 ccau guaggucucaucuuucu agccccuuauugc uccau acu                            aguuugcuucga cua                                         gugg gucucc    ucuu u
 |||| ||||||||||||||||| ||||||||||||| ||||| |||                            |||||||||||| |||                                         |||| ||||||    |||| g
 ggug caucCAGGGUAGAAAGA UCGGGGAauaacg aggua ugg                            ucggacgagguu gau                                         cauu cagagg    ggaa u
g    c                 U             u     g   uguuggcugguggcgucaacaaaagaac            a   gaagaaacgguagagagauguuguugaacaaaacgaucuaa    a      -agu    u 

Annotation confidence Not enough data

Genome context

chr7: 27471371-27471615 [-]

Mature gra-miR8701

• Accession: MIMAT0034082
• Description: Gossypium raimondii gra-miR8701 mature miRNA
• Sequence: 215 - AGGGGCUUAGAAAGAUGGGAC - 235
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629