Stem-loop gra-MIR8702

Accession

MI0027678

Description

Gossypium raimondii gra-MIR8702 precursor miRNA

Sequence

caauaauagaAGGUAUUGUCUCUGGGGAAGGGUUuuguccccccuccaccgagagccguguacgguugccucuugguugguggccauagggucgaggcgcucuccucugugcaccguacauggcucucuguggggggggggggaacccuuccuuacgggacaauacauuccauuauuga
(((((((.(((.(((((((((((((((((((((((..((((((((((((.((((((((((((((((.((((..(((((...)))))..))))....((((........)))))))))))))))))))).)))))))))))).))))))))))))).)))))))))).))).))))))).

Structure

-       a   G          -             ug            c                -------------------u    cu     g 
 caauaau gaA GUAUUGUCUC UGGGGAAGGGUUu  uccccccuccac gagagccguguacggu                    gccu  ugguu  
 ||||||| ||| |||||||||| |||||||||||||  |||||||||||| ||||||||||||||||                    ||||  ||||| g
 guuauua cuu cauaacaggg auuccuucccaag  ggggggggggug cucucgguacaugcca                    uggg  accgg  
a       c   a          c             -g            u                cgugucuccucucgcggagc    au     u 

Annotation confidence Not enough data

Genome context

chr10: 58834832-58835010 [+]

Mature gra-miR8702

• Accession: MIMAT0034083
• Description: Gossypium raimondii gra-miR8702 mature miRNA
• Sequence: 11 - AGGUAUUGUCUCUGGGGAAGGGUU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629