Stem-loop gra-MIR530a

Accession

MI0027681

Description

Gossypium raimondii gra-MIR530a precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

guagcuuuuaucugcauuugcaccugcaccuuauuguuuguuucagcuaugucagaaaaacaaaacacuguaagauauguuuuguguggugugguuggagaccaaacaaagAGGUGCAGAUGCAGUUGCAGGugaaugccau
...((.((((((((((.(((((.(((((((((.(((((((((((((((((((((.(....(((((((.(((...))))))))))).))))))))))))))..))))))).))))))))).))))).)))))))))).))...

Structure

gua  u          u     c         a       --              g aaaa       c   a 
   gc uuuaucugca uugca cugcaccuu uuguuug  uuucagcuauguca a    caaaaca ugu  
   || |||||||||| ||||| ||||||||| |||||||  |||||||||||||| |    ||||||| ||| a
   cg aaguGGACGU GACGU GACGUGGAg aacaaac  gagguugguguggu u    guuuugu aua  
uac  u          U     A         a       ca              g ----       -   g 

Annotation confidence Not enough data

Genome context

chr13: 58084673-58084814 [+]

Mature gra-miR530a

• Accession: MIMAT0034086
• Description: Gossypium raimondii gra-miR530a mature miRNA
• Sequence: 112 - AGGUGCAGAUGCAGUUGCAGG - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629