Stem-loop gra-MIR8707

Accession

MI0027689

Description

Gossypium raimondii gra-MIR8707 precursor miRNA

Sequence

uaaaauggcuauugaauuuuucaaaauuuuuuacuuaaaccaacgcuuauuguauggcuuucauuguguacaaugcuugugccaauugaaagcuuucauuuucauuuucuuuuauaguuuaauauuuuuuuucuugaaauagcuuuaaacaucacgaauauacggauuaaaauauaaauaaauuuuuucucuaaucuucaacauugaucaucaaaucaauuaagaucuaaggaauguuuuacucaucaauagguauugauuuaucacaucgaucgucgaaucgucguuuggaguucaauagcugaauuuaaaaaaaaaauuaauaacucaauaacuuaaAUAAAAACUUUUGAAUAAUUCAGUgauuucaaug
.........(((((((((.(((((((.((((((.((((..(((.((((((((.(((((((((((((.((((((...))))))))).))))))).................((((((.((((((.......(((.(((..............))).))).......)))))).))))))((((...(((((...(((((....((((((......)))))).)))))...)))))...))))..))))))))))).)))...........(((.((.((...)).)).)))(((((((.....)))))))..........................)))).)))))).))))))).))))))))).........

Structure

uaaaauggc         u       u      c    ---------------------------------------------------------------------------ac   c        u   gcuuucauuguguacaaugcuugugccaauugaaagcuuucauuuucauuuucuuuuauaguuuaauauuuuuuuucuugaaauagcuuuaaacaucacgaauauacggauuaaaauauaaa    uuu     cua     caac      ca 
         uauugaauu uucaaaa uuuuua uuaa                                                                             caa gcuuauug aug                                                                                                                          uaaa   uuucu   aucuu    auugau  u
         ||||||||| ||||||| |||||| ||||                                                                             ||| |||||||| |||                                                                                                                          ||||   |||||   |||||    ||||||   
         gUGACUUAA AAGUUUU AAAAAU aauu                                                                             guu uggauaac uac                                                                                                                          auuu   aagga   uagaa    uaacua  c
guaacuuua         U       C      A    caauaacucaauaauuaaaaaaaaaauuuaagucgauaacuugagguuugcugcuaagcugcuagcuacacuauuua   a        -   ------------------------------------------------------------------------------------------------------------------------uc    ugu     auc     ---u      aa 

Annotation confidence Not enough data

Genome context

chr10: 117161-117533 [+]

Mature gra-miR8707

• Accession: MIMAT0034094
• Description: Gossypium raimondii gra-miR8707 mature miRNA
• Sequence: 340 - AUAAAAACUUUUGAAUAAUUCAGU - 363
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629