Stem-loop gra-MIR8711

Accession

MI0027694

Description

Gossypium raimondii gra-MIR8711 precursor miRNA

Sequence

uuaaacaaaaAUACUACACUAAGGGCACUAGAUCccaacagucucacacaugcauugaugaaguagaugagccauaguucacauuaccauacucucuauauguuuccccauucucuuagccaccagagucuugguaaaacaaauauacaagguuauccucagauguaguuuugacuacauccacuauucuaucaauuucuaucgucucucuuaugacacuuucuauuaauguguugugucuucaugugguuucuuugguguuuagcuauuuuugcauug
.....((((((((((((((((((((.((((.((....(((.....((((((..(((((((.(((((.(((((....)))))...............(((.(((((..(((..((((........))))...)))..))))).)))....(((....)))..((((((((....))))))))..))))).))))))).......(((........)))...........))))))..)))....)).)))).))))))))))..)).)))))))).....

Structure

uuaaa        -  --          C    G  Ccca   gucuc      ------------------------------gc       a     --------augagccauaguucacauuaccauacucuc   a     cc   -uu    uag 
     caaaaAUA CU  ACACUAAGGG ACUA AU    aca     acacau                                auugaug aguag                                      uau uguuu  cca   cucu   c
     |||||||| ||  |||||||||| |||| ||    |||     ||||||                                ||||||| |||||                                      ||| |||||  |||   ||||    
     guuuuuau ga  ugugguuucu uggu ua    ugu     ugugua                                uaacuau uuauc                                      aua acaaa  ggu   gaga   c
guuac        c  uu          u    g  cuuc   ---gu      auuaucuuucacaguauucucucugcuaucuu       c     accuacaucaguuuugauguagacuccuauuggaacau   a     au   ucu    cca 

Annotation confidence Not enough data

Genome context

chr5: 19980282-19980560 [-]

Mature gra-miR8711

• Accession: MIMAT0034099
• Description: Gossypium raimondii gra-miR8711 mature miRNA
• Sequence: 11 - AUACUACACUAAGGGCACUAGAUC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629