Stem-loop gra-MIR8713

Accession

MI0027697

Description

Gossypium raimondii gra-MIR8713 precursor miRNA

Sequence

gagauaaguuAUGACUGUUUUAAUGAAGAUUGCGcgaguaaaauuucgagacgagauuauuacaaaaauuaugaguuuuaagcuucuaauucgaguucaagaaacucauaauuuucguaauaaucccguccagaaauuuuacucgcgcaaucuucacuaaaauggucauaacuuaaaaa
....((((((((((((((((((.((((((((((((((((((((((((..((((.(((((((((.(((((((((((((((.(((((.......)))))...))))))))))))))).))))))))).))))..)))))))))))))))))))))))).))))))))))))))))))....

Structure

gaga                  A                        ga    a         a               --a     cu 
    uaaguuAUGACUGUUUUA UGAAGAUUGCGcgaguaaaauuuc  gacg gauuauuac aaaauuaugaguuuu   agcuu  a
    |||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||   |||||  a
    auucaauacugguaaaau acuucuaacgcgcucauuuuaaag  cugc cuaauaaug uuuuaauacucaaag   uugag  u
aaaa                  c                        ac    c         c               aac     cu 

Annotation confidence Not enough data

Genome context

chr5: 59328455-59328633 [+]

Mature gra-miR8713

• Accession: MIMAT0034102
• Description: Gossypium raimondii gra-miR8713 mature miRNA
• Sequence: 11 - AUGACUGUUUUAAUGAAGAUUGCG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629