Stem-loop gra-MIR7484e

Accession

MI0027702

Description

Gossypium raimondii gra-MIR7484e precursor miRNA

Gene family

MIPF0001667; MIR7484

Sequence

aaaaugggcaaauuagucccuguacguuagaucaaauagcaaguuugucauauuguuaauaauucuauucuuuuuuauuguuaaaaacuaguccuguauguuagcauuagguacuugugacacaccacguguaauuguuugguuauuucaucagucaggcugguuuuuaacaguuggaauggacagaaauuuuauuagaagggaccaguuuacucuuugAUUUAAUGUAUAGGGACUAAUuuguccauuu
.(((((((((((((((((((((((((((((((((((.((.(((((.(((......(((((((((((.(((.((((.((((((((((((((((((((.(((.((((..(((.(((.((((......)))).))).)))....))))...))))))...))))))))))))))))).)))).))).))))...)))))))....))).))))).)).)))))))))))))))))))))))))))))))))))

Structure

a                                   u  c     u   auauug       ---    a   u    u                 ---   u   --u    --au   g   u    ac 
 aaaugggcaaauuagucccuguacguuagaucaaa ag aaguu guc      uuaauaa   uucu uuc uuuu auuguuaaaaacuaguc   cug aug   uagc    uag uac ugug  a
 ||||||||||||||||||||||||||||||||||| || ||||| |||      |||||||   |||| ||| |||| |||||||||||||||||   ||| |||   ||||    ||| ||| ||||   
 uuuaccuguuUAAUCAGGGAUAUGUAAUUUAguuu uc uuuga cag      gauuauu   aaga agg aagg ugacaauuuuuggucgg   gac uac   auug    guu aug gcac  c
-                                   c  a     c   --ggaa       uua    c   u    u                 acu   -   uuu    guuu   a   u    ca 

Annotation confidence Not enough data

Genome context

chr1: 5174499-5174748 [-]

Mature gra-miR7484e

• Accession: MIMAT0034107
• Description: Gossypium raimondii gra-miR7484e mature miRNA
• Sequence: 220 - AUUUAAUGUAUAGGGACUAAU - 240
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629