Stem-loop gra-MIR8771e

Accession

MI0027740

Description

Gossypium raimondii gra-MIR8771e precursor miRNA

Gene family

MIPF0001892; MIR8771

Sequence

aucuuauaugucaguccaaaugaguuuuaaaugccaacuuaaauguccaauugagaugagaauaaguuuuuaauuaaauaaaauuaauuaaauaaaaauuuuaaauuaauuacauuuugaaaugaaaaaaaaauuuguuugucucuuuuuucuuuuaguuuucuuuuucauuuugauugaaaaauuauucucaucccaauuggacaacgaaguuGGCAUUUAAAACACAUUUGGACUGcuacguagga
.((((((.((.(((((((((((.(((((((((((((((((...((((((((((.(((((((((((.(((((((((......((((((((.((........)).)))))))).......(((((((((((((((((.....................)))))).)))))))))))))))))))).))))))))))).))))))))))...))))))))))))))))).))))))))))).)).))))))

Structure

a      a  u           a                 aaa          a           g         aaauaaaauuaauuaaauaaaaauuuuaaauuaauuacauuuu           -      uguuugucu 
 ucuuau ug caguccaaaug guuuuaaaugccaacuu   uguccaauug gaugagaauaa uuuuuaauu                                           gaaaugaaaaa aaaauu         c
 |||||| || ||||||||||| |||||||||||||||||   |||||||||| ||||||||||| |||||||||                                           ||||||||||| ||||||         u
 aggaug au GUCAGGUUUAC CAAAAUUUACGGuugaa   acagguuaac cuacucuuauu aaaaguuag                                           uuuuacuuuuu uuuuga         u
-      c  c           A                 gca          c           a         -------------------------------------------           c      uuuucuuuu 

Annotation confidence Not enough data

Genome context

chr6: 46011896-46012143 [-]

Mature gra-miR8771e

• Accession: MIMAT0034145
• Description: Gossypium raimondii gra-miR8771e mature miRNA
• Sequence: 215 - GGCAUUUAAAACACAUUUGGACUG - 238
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629