Stem-loop gra-MIR399

Accession

MI0027741

Description

Gossypium raimondii gra-MIR399 precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

1 open access papers mention gra-MIR399
(2 sentences)

Sequence

accagucuuaGGGCACCUCUCACUUAGGCAGGuaauggugcauauuauggcauuuguucccaugacuugccaaaggagaguugcccugugacugcu
..(((((.(((((((.(((((.(((.(((((((.((((.(((............)))..)))).))))))).)))))))).))))))).)))))..

Structure

ac     u       C     A   A       a    -u   uauua 
  caguc uaGGGCA CUCUC CUU GGCAGGu augg  gca     u
  ||||| ||||||| ||||| ||| ||||||| ||||  |||      
  gucag gucccgu gagag gaa ccguuca uacc  ugu     g
uc     u       u     -   a       g    cu   uuacg 

Annotation confidence Not enough data

Genome context

chr8: 55810583-55810678 [+]

Mature gra-miR399

• Accession: MIMAT0034146
• Description: Gossypium raimondii gra-miR399 mature miRNA
• Sequence: 11 - GGGCACCUCUCACUUAGGCAGG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629