Stem-loop gra-MIR8735

Accession

MI0027742

Description

Gossypium raimondii gra-MIR8735 precursor miRNA

Sequence

gacuagauucccaacaaccaaagguauuguucucaugucagggguuugucccuagccuccguagagagucgugcacaguucauggaggggacaccucaguuggugguacaugcaauacuugggagagguguuagcauagagcgugugaauaauuauucaacaaccuaaagugguaccaugguuguagguaagggucuuauaagccucagguugguuguuugagucaccccgcuauuagguugcucaauaauuauucacaccauauacuaacaccucucuugagucuuguagguaccaccaauugaggcacucccucuaugaaucguacauuguucuccgcagaggcuagggacgaaacccaaacauGGGGACAAUACCUUCGAUUGUUGGaggguccagu
.(((.((((((((((((.(.((((((((((((((((((..(((..((((((((((((((.((.(((((..(((.((.(((((((((((((...((((((((((((((((.(((((.((((((((((((((((((.(((..(.(((((((((((((((...(((((((((((((((((.........)))).(((.((((..((((.......))))...)))).).))))))).))))))))...)))))))))))))))).))).)))))))))))))))))).))))).))))))))))))))))...))))))))))))).)).)))..))))).)).))))))))))))))..)))..)))))))))))))))))).).))))))).))))).)))

Structure

g   a     -       c a                  ca   gu              c  a     uc   c  a             aca                a     u                  c   ga c               caa        -     uaccaugguuguagguaa  - u    -ua    uc 
 acu gauuc ccaacaa c aagguauuguucucaugu  ggg  uugucccuagccuc gu gagag  gug ac guucauggagggg   ccucaguuggugguac ugcaa acuugggagagguguuag aua  g gugugaauaauuauu   caaccuaa agugg                  gg g cuua   agcc  a
 ||| ||||| ||||||| | ||||||||||||||||||  |||  |||||||||||||| || |||||  ||| || |||||||||||||   |||||||||||||||| ||||| |||||||||||||||||| |||  | |||||||||||||||   |||||||| |||||                  || | ||||   ||||  g
 uga cuggg GGUUGUU G UUCCAUAACAGGGGuaca  ccc  agcagggaucggag cg cucuu  uac ug uaaguaucucccu   ggaguuaaccaccaug auguu ugaguucucuccacaauc uau  c cacacuuauuaauaa   guuggauu ucgcc                  cc c gagu   uugg  g
-   c     a       A C                  aa   aa              a  c     gu   a  c             cac                g     c                  a   -a -               cuc        a     ------------------  a u    uug    uu 

Annotation confidence Not enough data

Genome context

chr4: 49758948-49759347 [-]

Mature gra-miR8735

• Accession: MIMAT0034147
• Description: Gossypium raimondii gra-miR8735 mature miRNA
• Sequence: 367 - GGGGACAAUACCUUCGAUUGUUGG - 390
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629