Stem-loop gra-MIR8737

Accession

MI0027744

Description

Gossypium raimondii gra-MIR8737 precursor miRNA

Sequence

acguguugaguuggcguuguuuuuaggggauacgcagaaagacgugucuagcucagcguuuuuuuuuuccuguuguuaaguaaaauacacuaacauggaagcgcuuuucaaaaaaguguccacauaggugugcuuuuauccguguuuucccaauuaugguuuuguuuuaauuuuuaacuauuuacgguuagggcuuuuuaugugaauaaguuuaggauuuaggguuuauuuuuucaggauuuaggcaaaagcgugcccauguggacgcgcuuacacaucagugcguuuuaccuaacaacagggaaaaaagugcugagcuagacgugcuuaucuGUGUAUCUCCUGAAAACGACGACAgcucggcgug
.((((((((((((.(((((((((((((((((((((((((((.((((((((((((((((..((((((((((((((((((.(((((((.((((....((..(((((.............((((((((.(((((((((((..((......(((.((..((((.(((.....((((((.(((((((((((..............))))))).)))).))))))..))).))))..))...)))....)).))))))))))).)))))))))))))..))....)))).))))))).))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))).))))))))))))

Structure

a            g                        -   a                uu                  a       a    aaca  ga     uuuucaaaaaagu        a           au  guguuu   --c  uu    u   guuuu      u    -       guuagg 
 cguguugaguug cguuguuuuuaggggauacgcaga aag cgugucuagcucagcg  uuuuuuuuccuguuguua guaaaau cacu    ug  agcgc             guccacau ggugugcuuuu  cc      ucc   aa  augg uuu     aauuuu aacu auuuacg      g
 |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||||| ||||    ||  |||||             |||||||| |||||||||||  ||      |||   ||  |||| |||     |||||| |||| |||||||       
 gugcggcucgAC GCAGCAAAAGUCCUCUAUGUGucu uuc gugcagaucgagucgu  gaaaaaagggacaacaau cauuuug guga    ac  ucgcg             caggugua ccgugcgaaaa  gg      agg   uu  uauu ggg     uuagga uuga uaagugu      c
-            A                        a   -                --                  c       c    cuac  au     -------------        c           -c  --auuu   acu  uu    u   ---au      u    a       auuuuu 

Annotation confidence Not enough data

Genome context

chr8: 39246641-39247007 [-]

Mature gra-miR8737

• Accession: MIMAT0034149
• Description: Gossypium raimondii gra-miR8737 mature miRNA
• Sequence: 334 - GUGUAUCUCCUGAAAACGACGACA - 357
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629