Stem-loop gra-MIR8743d

Accession

MI0027756

Description

Gossypium raimondii gra-MIR8743d precursor miRNA

Gene family

MIPF0001907; MIR8743

Sequence

uugauaauguugguggcuauuauguaacuuuugaaaguuggaugagaaaauguaauuuuaaacaaaguuuagggacaguugguguaauuuacccauuuaauauuuggguaaacugcauuacuagucacucaauuguuaguauuuuuuugucacucaacUAUGAAAAGUUACAAAAUGGUCAUccaauuauua
.(((((((...((((((((((.((((((((((.(.(((((((((((((((((((((.........((((.((.((((((.((((((.((((((((.........)))))))).))))))))).))).)).)))))))).))))))))))))...))))).).)))))))))).))))))))))..)))))))

Structure

u       guu          a          g a     ---            -    uuuaaacaa    u  g   -   u      a        uuu 
 ugauaau   gguggcuauu uguaacuuuu a aguug   gaugagaaaaug uaau         aguu ag gac agu ggugua uuuaccca   a
 |||||||   |||||||||| |||||||||| | |||||   |||||||||||| ||||         |||| || ||| ||| |||||| ||||||||   a
 auuauua   cUACUGGUAA ACAUUGAAAA U Ucaac   cuguuuuuuuau auug         uuaa uc cug uca uuacgu aaaugggu   u
-       -ac          A          G A     uca            g    ---------    c  a   a   -      c        uua 

Annotation confidence Not enough data

Genome context

chr12: 26054019-26054210 [+]

Mature gra-miR8743d

• Accession: MIMAT0034161
• Description: Gossypium raimondii gra-miR8743d mature miRNA
• Sequence: 159 - UAUGAAAAGUUACAAAAUGGUCAU - 182
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629