Stem-loop gra-MIR8781a

Accession

MI0027759

Description

Gossypium raimondii gra-MIR8781a precursor miRNA

Gene family

MIPF0001867; MIR8781

Sequence

cuauuaauuugaucuuaguuuuaaauaauuuaauaaauuuaacccuuuacauauauaaauucuaucaauuugaacgucauauuuuuuaaccaaaauuuucagcuuuuaaaauagaggcauuccacaucuauuaauuguuuuauuuaugcuggucaaagugauuuuuuuuauuacaaauauuaaaauauuuauauaauuuuauuguguauguuauaucuuuuuaaaauuuguauuuucuauuauuuuuagugguguuuaguuaauuucuaacacuaauuccuuaaaaauauaaauaaaaagggucauguaccaaauugaaaauaauuucaaccauaaauaaaacaauuaaaagcugaaagcuuugguuaggaaauuugaggauuaaauugauauaauuuauaaaugugaaggguuaaauuUAUUGAAUUAUUUAGAACUAGGAUcaaauugaua
.(((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((.(((((((((((.(.(((.((((((((((((((.(((((((((((((.(((((((........).)))))).(((((((((((((((.((((....(((((((((((((((((((((.((((((.....(((((((............)))))))..)))))).)))))))........((((((((((((((((.((.......))))))))).....)))))))))...))))))))))))))..))))..((((((....)))))).)))))))))))))))))))))))))))).)))))))))))))).))).).))))))))))).)))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

c                                                   a        c           a g   u              a             aaauagaggcauuccacaucuauua               ------------------c    caaa              ------------------------------------------------------------       a      uauuu       uuuau 
 uauuaauuugaucuuaguuuuaaauaauuuaauaaauuuaacccuuuacau uauaaauu uaucaauuuga c uca auuuuuuaaccaaa uuuucagcuuuua                         auuguuuuauuuaug                   uggu    gugauuuuuuuuau                                                            uacaaau uuaaaa     auauaau     u
 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| |||||||||||||| |||||||||||||                         |||||||||||||||                   ||||    ||||||||||||||                                                            ||||||| ||||||     |||||||      
 auaguuaaacUAGGAUCAAGAUUUAUUAAGUUAUuuaaauugggaagugua auauuuaa auaguuaaauu g agu uaaaggauugguuu gaaagucgaaaau                         uaacaaaauaaauac                   acca    uacugggaaaaaua                                                            auguuua aauuuu     uauauug     g
-                                                   a        u           a g   u              c             -------------------------               caacuuuaauaaaaguuaa    --ug              aauauaaaaauuccuuaaucacaaucuuuaauugauuuguggugauuuuuauuaucuuuu       a      ---uc       uaugu 

Annotation confidence Not enough data

Genome context

chr8: 409852-410304 [-]

Mature gra-miR8781a

• Accession: MIMAT0034164
• Description: Gossypium raimondii gra-miR8781a mature miRNA
• Sequence: 420 - UAUUGAAUUAUUUAGAACUAGGAU - 443
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629