Stem-loop gra-MIR8709b

Accession

MI0027764

Description

Gossypium raimondii gra-MIR8709b precursor miRNA

Gene family

MIPF0001862; MIR8709

Sequence

aucuuuaugggauaaucuuaaaauuauacauuaacuuuauuuuacuguguaauuuuauacaugaaauuuuaauuugauuucauuuucacaauuuauuaacacgauuauugauauaacaucauuuuauguuuauauauuucaugcacaaauaacuauauuuauacaauaaaaaagguaaugugauguauuuauuuuuuaaaauguguauauaauugaaucaauauuaaaguuuuauguauauauauuugaaccaaagucaaaguuucauauauauaacuacaccaaaucaaaauuaauguauaaaauuacacauugaauuaaaauUCAUGUAUAAUUUUGAGAUUUGUCucauuuuuau
......(((((((((((((((((((((((((.((.((((.((((.(((((((((((((((((..((((((.(((((.........................(((((((..((((((((((((.((((.(((.....(((..((...(((((....)))))...))..)))))).)))).)))))))...............)))))..)))))))............((((.(((((((..(..(((((.......)))))..)..))))))).))))....))))).)))))).))))))))))))))))).)))).)))).)).)))))))))))))))).)))))))))......

Structure

aucuuu         -                u  c    u    c                 ga      a     ------------------------------------------auuucauuuucacaauuuauuaaca       ug     ---------------       u    g   auaua   ca  cac     a 
      augggauaa ucuuaaaauuauacau aa uuua uuua uguguaauuuuauacau  aauuuu auuug                                                                   cgauuau  auaua               acaucau uuau uuu     uuu  ug   aaaua c
      ||||||||| |||||||||||||||| || |||| |||| |||||||||||||||||  |||||| |||||                                                                   |||||||  |||||               ||||||| |||| |||     |||  ||   |||||  
      uacuCUGUU AGAGUUUUAAUAUGUA Uu aaau aagu acacauuaaaauaugua  uuaaaa uaaac                                                                   guuaaua  ugugu               uguagug aaug aaa     aaa  ac   uuuau u
uauuuu         U                C  a    u    u                 -a      c     cacaucaauauauauacuuugaaacugaaaccaaguuuauauauauguauuuugaaauuauaacuaa       ua     aaaauuuuuuauuua       u    g   -----   ua  aua     a 

Annotation confidence Not enough data

Genome context

chr7: 23636490-23636847 [-]

Mature gra-miR8709b

• Accession: MIMAT0034169
• Description: Gossypium raimondii gra-miR8709b mature miRNA
• Sequence: 325 - UCAUGUAUAAUUUUGAGAUUUGUC - 348
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629