Stem-loop gra-MIR166d

Accession

MI0027775

Description

Gossypium raimondii gra-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention gra-MIR166d
(5 sentences)

Sequence

gcgaaaggguUGAUGGGAAUGUUGUUUGGCUcgaggucauuuaggguucgucuaauaucuacaugugcauacauacauagcccuauaugaugucggaccaggcuucauucccaucaaccaaacacu
.......((((((((((((((..((((((.((((.(((((.(((((((..............(((((......)))))))))))).))))).)))).))))))..)))))))))))))).......

Structure

gcgaaag              UU      C    g     u       cgucuaauaucuac     ca 
       gguUGAUGGGAAUG  GUUUGG Ucga gucau uaggguu              augug  u
       ||||||||||||||  |||||| |||| ||||| |||||||              |||||   
       ccaacuacccuuac  cggacc ggcu uagua aucccga              uacau  a
ucacaaa              uu      a    g     u       --------------     ac 

Annotation confidence Not enough data

Genome context

chr2: 55818490-55818615 [+]

Mature gra-miR166d

• Accession: MIMAT0034180
• Description: Gossypium raimondii gra-miR166d mature miRNA
• Sequence: 11 - UGAUGGGAAUGUUGUUUGGCU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629