Stem-loop gra-MIR8758

Accession

MI0027782

Description

Gossypium raimondii gra-MIR8758 precursor miRNA

Sequence

cuggagcugcUGGGCUUCUUGCAAGAUGAAGGUAaucuaggggauguaggagcuuguguuuuggaauguucuccgauucuuaaaugagcaaaggguguuauguaauggugaagacaaguaaauaauuuaguaugucggaggcugaaagccacuuuguucuccaaguggcauaggagaacaaucaauauaccauugcaauacaccuuuugccaacuuaagcaucggagagcgucuuggaguaaaagcuccaaugccgcccuaugucaccuacaucuugcaggaagcccugcagcuccagu
((((((((((.(((((((((((((((((.((((.((.(((((...((((((((((.((((((((.((((((((((((.(((((.((.(((((((((((..((((((((((..(((((.((((...)))).).))))...((((...))))...(((((((((..........)))))))))......))))))))))..)))))))))))))..))))).)))))))))))).)))))))).)))))))..)))..))))).)).)))).))))))))))))))))).)))))))))).

Structure

-          U                 A    A  c     gau   --       g        a            u     -a  a           ua          -------------------------------------------------aa    - g    u 
 cuggagcugc GGGCUUCUUGCAAGAUG AGGU au uaggg   gua  ggagcuu uguuuugg auguucuccgau cuuaa  ug gcaaagggugu  uguaauggug                                                   gaca a uaaa  
 |||||||||| ||||||||||||||||| |||| || |||||   |||  ||||||| |||||||| |||||||||||| |||||  || |||||||||||  ||||||||||                                                   |||| | |||| a
 gaccucgacg cccgaaggacguucuac ucca ug auccc   cgu  ccucgaa augagguu ugcgagaggcua gaauu  ac cguuuuccaca  acguuaccau                                                   cugu u auuu  
u          u                 a    c  u     -gc   aa       a        c            c     ca  -           ua          auaacuaacaagaggauacggugaaccucuuguuucaccgaaagucggagg    a g    a 

Annotation confidence Not enough data

Genome context

chr4: 11590621-11590919 [+]

Mature gra-miR8758

• Accession: MIMAT0034187
• Description: Gossypium raimondii gra-miR8758 mature miRNA
• Sequence: 11 - UGGGCUUCUUGCAAGAUGAAGGUA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629