Stem-loop gra-MIR8762a

Accession

MI0027787

Description

Gossypium raimondii gra-MIR8762a precursor miRNA

Gene family

MIPF0001859; MIR8762

Sequence

gauggauaagUUAACAUUUGUUAACUUUGCUGACguggcaucuacguggauugucuuguuaaugucacaucaacagauaauuaauuuuuuaaauuuuaaaaaaauucaaaaaauuuauuaaaauuauuuaaaaauuaaauaaaauguuuuuuaauauuuuuaauuuuuuuaaaauuaauuaauugcuuacauggcauacauguggacugccacaugaaugcuacaucaacaagguaacagauguuaauuuaucuauuu
(((((((((((((((((((((((.(((((.(((.(((((((.......((((((((.(((.(((...))).))))))))))).........(((((((((((((((.(((((...((((((((((((((((...))))))))......)))))))))))))))))))))))))))).......((((.....))))..(((((((....))))))).))))))).))).)))))))))))))))))))))))))))).

Structure

-                       A     C   C       cuacguggauugucuuguuaaugucacaucaacagauaauuaauuuuuua               c     auu        ------        a 
 gauggauaagUUAACAUUUGUUA CUUUG UGA guggcau                                                  aauuuuaaaaaaauu aaaaa   uauuaaaa      uuauuuaa  
 ||||||||||||||||||||||| ||||| ||| |||||||                                                  ||||||||||||||| |||||   ||||||||      |||||||| a
 uuaucuauuuaauuguagacaau ggaac acu caucgua                                                  uuaaaauuuuuuuaa uuuuu   auaauuuu      aauaaauu  
u                       -     a   a       ---------aguacaccgucagguguacauacgguacauucguuaauuaa               -     ---        uuguaa        a 

Annotation confidence Not enough data

Genome context

chr6: 47375019-47375276 [-]

Mature gra-miR8762a

• Accession: MIMAT0034192
• Description: Gossypium raimondii gra-miR8762a mature miRNA
• Sequence: 11 - UUAACAUUUGUUAACUUUGCUGAC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629