Stem-loop gra-MIR8762b

Accession

MI0027789

Description

Gossypium raimondii gra-MIR8762b precursor miRNA

Gene family

MIPF0001859; MIR8762

Sequence

gauagaaaagUUAACGUUUGUUAACUUUGUUGAUguagaauauauguggauugucaaguaaucauuuaauuaauuuuuuaaaauuaaaaaauauuaaaauauuuuuuuauaauuucuauaauuauuuuuaauuuuuaaaaauauuauauauauuuuugauuuuuuuaaaaucuaaaaauuuaauuaaauauugaugugucauccacuuggcaauccauguguaugcaacaucaacaaaguuagaaaaauguuaacuuuuucauuca
((..(((((((((((((((.((((((((((((((((.(.((((((((((((((((((((....((((((((((.((((((.....(((((((((....))))))))).((((((.....))))))((((((...((((((((((.....)))))))))).....))))))..)))))).))))))))))...((((...)))).)))))))))))))))))))).).))))))))))))))))..)))))))))))))))...)).

Structure

-  -ua               -G                a a                    -----------aauc          u      aaauuaaaaaauauuaaaauauuuuuuuauaauuucuauaauuau      --uuu          u 
 ga   gaaaagUUAACGUUU  UUAACUUUGUUGAUgu g auauauguggauugucaagu               auuuaauuaa uuuuua                                             uuuuaa     uuaaaaauau a
 ||   |||||||||||||||  |||||||||||||||| | ||||||||||||||||||||               |||||||||| ||||||                                             ||||||     |||||||||| u
 cu   uuuuucaauuguaaa  gauugaaacaacuaca c uauguguaccuaacgguuca               uaaauuaauu aaaaau                                             aaaauu     aguuuuuaua a
a  uac               aa                a g                    ccuacuguguaguua          u      -------------------------------------------cu      uuuuu          u 

Annotation confidence Not enough data

Genome context

chr7: 26992815-26993080 [+]

Mature gra-miR8762b

• Accession: MIMAT0034194
• Description: Gossypium raimondii gra-miR8762b mature miRNA
• Sequence: 11 - UUAACGUUUGUUAACUUUGUUGAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629