Stem-loop gra-MIR8653b

Accession

MI0027796

Description

Gossypium raimondii gra-MIR8653b precursor miRNA

Gene family

MIPF0002011; MIR8653

Sequence

ucuauuacacuggccguaaaauaaguugaacaauuuugagguguuccaaggagaugggauggucucaaccuuccauaacauauauacaucucccggaguaguagaacauuaguuguucgugaacuaauguucuacuacucuaggagauguauacuuguuauggaaggccgagaccaucucauccccuuggaacaccucaaaauuaUUCAAACUUAUUUUACGGCCAguguaauagc
.(((((((((((((((((((((((((((((.((((((((((((((((((((.((((((((((((((..((((((((((((..(((((((((((.((((((((((((((((((((.......)))))))))))))))))))).)))))))))))..))))))))))))..)))))))))))))).)))))))))))))))))))).))).)))))))))))))))))))))))))).

Structure

u                          -   c                    a              aa            ua           c                    gu 
 cuauuacacuggccguaaaauaaguu gaa aauuuugagguguuccaagg gaugggauggucuc  ccuuccauaaca  uauacaucucc ggaguaguagaacauuaguu  u
 |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||  ||||||||||||  ||||||||||| ||||||||||||||||||||  c
 gauaaugugACCGGCAUUUUAUUCAA CUU uuaaaacuccacaagguucc cuacucuaccagag  ggaagguauugu  auauguagagg ucucaucaucuuguaaucaa  g
c                          A   a                    c              cc            uc           a                    gu 

Annotation confidence Not enough data

Genome context

chr11: 60619169-60619404 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8653b

Mature gra-miR8653b

• Accession: MIMAT0034201
• Description: Gossypium raimondii gra-miR8653b mature miRNA
• Sequence: 206 - UUCAAACUUAUUUUACGGCCA - 226
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629