Stem-loop gra-MIR8772

Accession

MI0027805

Description

Gossypium raimondii gra-MIR8772 precursor miRNA

Sequence

augucccucccucuauguaaccacauuccaaugcuuaacuagucgaugugggauuguuuuucccucucaaaacuagccucuuagguaagcgugugaacugucgagaucuggauggauccaagacacguuaccacagguagcgucguuuguuuacacuucuucugguagagagcugagcuggaggucgagucuuuggacauguaaguugaaauggagcugcugagcuuccuacaagaugaaggugagcuaaggggcguaauaguuugucuaggggucaggucuacuaauaaggaUUGGACUGUGGCUACAUAUAGcaagggucac
.((.((((..((.((((((.(((((.((((((.((((..((((.(((.(((.........(((((....(((((((((((((((.(..((((((((((.(((..(((((....)))))...)))((((((((...)))))))).....))))))))(((.(((.((((.(((((.(((...((.((.(...(((.(((......))).)))).)).))))).))))).)))).))).))).)).).)))))))))....))))))....)))))))).))).)))).)))).)))))).))))).)))))).))..)))).)).

Structure

a  u    cc  c      a     u      g    ac    c   g   gauuguuuu     cuca      ----         g aa  gugugaacugucgagaucuggauggauccaagacacguuaccacagguagcgucguuuguuuacac   u   g    a     g   ugg  g  g guc   g   au 
 ug cccu  cu uaugua ccaca uccaau cuua  uagu gau ugg         ucccu    aaacua    gccucuuag u  gc                                                                  uuc ucu guag gagcu agc   ag uc a   uuu gac  g
 || ||||  || |||||| ||||| |||||| ||||  |||| ||| |||         |||||    ||||||    ||||||||| |  ||                                                                  ||| ||| |||| ||||| |||   || || |   ||| |||   
 ac ggga  GA AUACAU GGUGU AGGUUa gaau  auca cug acu         gggga    uuugau    cggggaauc a  ug                                                                  aag aga cauc uucga ucg   uc ag u   aaa uug  u
c  u    ac  U      C     C      g    -a    u   g   ---------     ucug      aaug         g -g  -----------------------------------------------------------------g   u   a    c     g   ---  g  g ---   g   aa 

Annotation confidence Not enough data

Genome context

chr4: 24684259-24684582 [+]

Mature gra-miR8772

• Accession: MIMAT0034210
• Description: Gossypium raimondii gra-miR8772 mature miRNA
• Sequence: 294 - UUGGACUGUGGCUACAUAUAG - 314
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629