Stem-loop gra-MIR8776d

Accession

MI0027817

Description

Gossypium raimondii gra-MIR8776d precursor miRNA

Gene family

MIPF0001899; MIR8775

Sequence

acaggggagcaaaugguaugcaagaacuuucaaaauuuuccucugcucacacaagauccaugcccaauggcacgcuuuauauaauucgagcucguggucucguuaauaacuaaagaccgaccaauuauuuggaaaacgaaaugcuugaagccauugugaagaaaaaUUUCAAAGUCCUUGCAUACUAUUUucucaccagu
...((.(((.((((((((((((((.(((((.(((.(((((.((.((...............)).(((((((.............((((((((((((((((.(((...)))...)))))..((((....))))...))))...)))))))))))))).)).))))).))).))))).)))))))))))))).))).))...

Structure

aca  g   c              a     c   a     c  ugcucacacaagauccaugcc       acgcuuuauauaa       ---    -----------------     --c   a 
   gg gag aaaugguaugcaag acuuu aaa uuuuc uc                     caauggc             uucgagc   ucgu                 ggucu   guu  
   || ||| |||||||||||||| ||||| ||| ||||| ||                     |||||||             |||||||   ||||                 |||||   ||| a
   cc cuc UUUAUCAUACGUUC UGAAA UUU aaaag ag                     guuaccg             aaguucg   agca                 ccaga   caa  
uga  a   u              C     C   a     a  --------------------u       -------------       uaa    aaagguuuauuaaccag     aau   u 

Annotation confidence Not enough data

Genome context

chr13: 51870292-51870491 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8776d

Mature gra-miR8776d

• Accession: MIMAT0034222
• Description: Gossypium raimondii gra-miR8776d mature miRNA
• Sequence: 167 - UUUCAAAGUCCUUGCAUACUAUUU - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629