Stem-loop gra-MIR482d

Accession

MI0027819

Description

Gossypium raimondii gra-MIR482d precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

1 open access papers mention gra-MIR482d
(26 sentences)

Sequence

acuggaaauuuuuggaaguggggugcgaggaaagaucauuucucuucucucuuauauauauacacacacacacacacacacacauacaaagagaucaaaccagaucUUUCCUAUGCCCCCCAUUCCACugauuucuag
.(((((((((..(((((.(((((.(((((((((((((........(((((.......................................)))))........)))))))))).))).))))))))))..)))))))))

Structure

a         uu     g     u   -          auuucucu     cuuauauauauacacaca 
 cuggaaauu  uggaa ugggg gcg aggaaagauc        ucucu                  c
 |||||||||  ||||| ||||| ||| ||||||||||        |||||                  a
 gaucuuuag  ACCUU ACCCC CGU UCCUUUcuag        agaga                  c
-         uC     -     C   A          accaaacu     aacauacacacacacaca 

Annotation confidence Not enough data

Genome context

chr5: 56339343-56339480 [+]

Mature gra-miR482d

• Accession: MIMAT0034224
• Description: Gossypium raimondii gra-miR482d mature miRNA
• Sequence: 107 - UUUCCUAUGCCCCCCAUUCCAC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629