Stem-loop gra-MIR8782

Accession

MI0027827

Description

Gossypium raimondii gra-MIR8782 precursor miRNA

Sequence

uauuuucuuuuuauuccccuucaacaccaaaaauagagaggccucuuaccaauuaguccaaaaaguuuuuucuacuaaaaaguauuuuuguaaaauagccgauuccaauugaaaauaaauuuuauuuauuuuucaaaaaaaaaaauuugucguucaaauuaugucuaacauagcaguuaaugauauucauaguaguuuucuuuugcucacauuauauuuggaaacaauaaauuuaacuaaaaauuauaauuuauacauaauaaaauuuuucuagagcuuuuauauuuauaauuuuauaccauguacguaaaucaaauuaauaauaaaauuauaauuauaaaaguuuuagaaaaaccuuucuauuUUUGGUGUUGAAGGGGAAUAAaaggaaauaa
...((((((((((((((((((((((((((((((((((((((.................((((((..(((((......)))))..))))))............((((((((((((((((((...))))).))))))).......((((((.....))))))(((((((((......))))..)))))....(((((.......)))))..........))))))...(((((((..............)))))))...........(((((((((((((((((((.((((((((((((.........................)))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))...

Structure

uau                                      ccucuuaccaauuaguccaaaaaguuuuuucuacuaaaaaguauuuuuguaaaauagccgauuccaauugaaaauaaauuuuauuuauuuuucaaaaaaaaaaauuugucguucaaauuaugucuaacauagcaguuaaugauauucauaguaguuuucuuuugcucacauuauauuuggaaacaauaaauuuaacuaaaaauuauaauuuauacauaauaaaa                   u            accauguacgu 
   uuucuuuuuauuccccuucaacaccaaaaauagagagg                                                                                                                                                                                                                                uuuuucuagagcuuuuaua uuauaauuuuau           a
   ||||||||||||||||||||||||||||||||||||||                                                                                                                                                                                                                                ||||||||||||||||||| ||||||||||||           a
   aaaggaaAAUAAGGGGAAGUUGUGGUUUuuaucuuucc                                                                                                                                                                                                                                aaaaagauuuugaaaauau aauauuaaaaua           a
aau                                      --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                   u            auaauuaaacu 

Annotation confidence Not enough data

Genome context

chr6: 32090152-32090546 [-]

Mature gra-miR8782

• Accession: MIMAT0034232
• Description: Gossypium raimondii gra-miR8782 mature miRNA
• Sequence: 365 - UUUGGUGUUGAAGGGGAAUAA - 385
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629