Stem-loop gra-MIR8767c

Accession

MI0027835

Description

Gossypium raimondii gra-MIR8767c precursor miRNA

Gene family

MIPF0001948; MIR8767

Sequence

uuccuuuccuUUUUCAACUCUGCCAAGCAAUggagguaaaaauaaaaauuacuuuuucuuucaauuuuuccaucucuccuaccaagcacaccuauggaaagaaaaaaaauauauuuucccucauucuauuuuucugccccuucaauuuuccaucuuuagaagaauggaaaacauuauuuuucuuuccauagguguccuugccaggagagaugaaaaaauggauucuauccauugcuugguagaguugaaaacugaaaggaaa
((((((((..(((((((((((((((((((((((((((((.........)))))......((((.((((((.(((((((((..((((.(((((((((((((((((((.(((...((((((....(((((............................)))))....)))))).))).))))))))))))))))))).))))..))))))))))))))).)))).....))))))))))))))))))))))))..)))))))).

Structure

-        cu                        gguaaaaauaaaaauuacuuuuucu    a      c         ac    c                   a   aua      cuca     uuuuucugccccu 
 uuccuuuc  UUUUCAACUCUGCCAAGCAAUgga                         uuca uuuuuc aucucuccu  caag acaccuauggaaagaaaaa aau   uuuucc    uucua             u
 ||||||||  ||||||||||||||||||||||||                         |||| |||||| |||||||||  |||| ||||||||||||||||||| |||   ||||||    |||||              
 aaggaaag  aaaaguugagaugguucguuaccu                         aggu aaaaag uagagagga  guuc uguggauaccuuucuuuuu uua   aaaagg    aagau             c
a        uc                        --------------------aucuu    a      -         cc    c                   a   --c      uaag     uucuaccuuuuaa 

Annotation confidence Not enough data

Genome context

chr1: 3731724-3731985 [-]

Mature gra-miR8767c

• Accession: MIMAT0034240
• Description: Gossypium raimondii gra-miR8767c mature miRNA
• Sequence: 11 - UUUUCAACUCUGCCAAGCAAU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629