Stem-loop gra-MIR8704

Accession

MI0027847

Description

Gossypium raimondii gra-MIR8704 precursor miRNA

Sequence

cacacagucacguggucugacagccugaacuggccaauuuaggcucacggguguuaaaaauguuuucuuuauaagagagccaugguccccucaacuggaaaaaagaaaaaaauugaaguagcagcuaaggauaauaaggggaaaaggcagcaaagaagagaagagaauaagaguucugaaagguuaacuauuauuuuuguaauuuuauuuugguuagguuagaguuuuaaagaaaggaggcaacaaauuuuaacacucguugagggcaccauggcucucuuauaaagaaaauauuuuaacacccuugaggccuuaauuAGUCAGUUCAGGCAGUCAGACCGUgugacuaugu
.(((.((((((((((((((((.((((((((((((.((((.(((((((.(((((((((((.((((((((((((((((((((((((((.((((((((.........................((.(((...................))).))............(((((....)))))...((.(((((((..((............))..))))))).)).((((.((((((...(.......)...)))))).)))))))))))).))))))))))))))))))))))))))))))))))))).))).)))).)))).)))))))))))).)))))))))))))))).)))

Structure

c   c                a            c    u    -   c           a                          c        uggaaaaaagaaaaaaauugaaguagcagcuaaggauaauaaggggaaaaggcagcaaagaagagaagagaauaagaguucugaa  g       uu  uuuug 
 aca agucacguggucugac gccugaacuggc aauu aggc uca ggguguuaaaa uguuuucuuuauaagagagccauggu cccucaac                                                                                     ag uuaacua  au     u
 ||| |||||||||||||||| |||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||                                                                                     || |||||||  ||      
 ugu ucagugUGCCAGACUG CGGACUUGACUG uuaa uccg agu cccacaauuuu auaaaagaaauauucucucgguacca gggaguug                                                                                     uu gauuggu  ua     a
-   a                A            A    u    g   u           -                          c        -----------------------------------------------cucacaauuuuaaacaacggaggaaagaaauuuugaga  g       uu  uuuua 

Annotation confidence Not enough data

Genome context

chr11: 27968361-27968712 [-]

Mature gra-miR8704

• Accession: MIMAT0034252
• Description: Gossypium raimondii gra-miR8704 mature miRNA
• Sequence: 319 - AGUCAGUUCAGGCAGUCAGACCGU - 342
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629