Stem-loop gra-MIR8674c

Accession

MI0027848

Description

Gossypium raimondii gra-MIR8674c precursor miRNA

Gene family

MIPF0001929; MIR8674

Sequence

ugaaacaaagacgccacauuaucuuguaucccuuaccaauuauuuaaugccauuucaacaucuuuuucuaugucauugacacaucauuuuggugauuuuuuuaaccugaacccuaaacuauggauccugaaccuugaacccuaaaccauggacccuggaccuagggacccuguaccuuggacccaagguuuagggucgagguugagauuaggguucaaaauccaaaguuuaggguuuagcauccaagguucaagguuugggguccaaggucgaagguuuaagauucaggguccaggguucaaggucuagaguucaaggucuaggaucgauguuucaaguuaaaaauuaccaaaaugaugugucaaugacauggaaaaagauguugaaauggcauuaaauaauugguAAGGGAUACAGGAUGAUGUGGCAUuaaauaauua
............((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((...(((((((((((.......((((((((((.((((((((.(..(((.((((((((((((((...(((((((.((((((....)))))).))))))).....((((....((((.(.((((((........)))))).).))))....)))))))))))))))))).)))..).)))))))).))))))))))))))))).))))(((((........)))))....((....)).....))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))............

Structure

ugaaacaaagac                                                                                        --------------------------------uua    -       aaacuau          c        c aa   a              agggacccuguaccuuggacccaagguuuagggucgaggu    auua    u a      aaa 
            gccacauuaucuuguaucccuuaccaauuauuuaaugccauuucaacaucuuuuucuaugucauugacacaucauuuuggugauuuuu                                   accu gaacccu       ggauccugaa cuugaacc u  acc uggacccuggaccu                                        ugag    gggu c aaaucc   g
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                   |||| |||||||       |||||||||| |||||||| |  ||| ||||||||||||||                                        ||||    |||| | ||||||    
            CGGUGUAGUAGGACAUAGGGAAugguuaauaaauuacgguaaaguuguagaaaaagguacaguaacuguguaguaaaaccauuaaaaa                                   ugga cuuggga       ccugggacuu gaauuugg a  ugg accugggguuugga                                        acuu    ccua g uuuggg   u
auuaauaaauUA                                                                                        uugaacuuuguagcuaggaucuggaacuugagauc    a       -------          a        a gc   a              ----------------------------------------    ggaa    c a      auu 

Annotation confidence Not enough data

Genome context

chr3: 37019414-37019853 [-]

Mature gra-miR8674c

• Accession: MIMAT0034253
• Description: Gossypium raimondii gra-miR8674c mature miRNA
• Sequence: 407 - AAGGGAUACAGGAUGAUGUGGCAU - 430
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629