Stem-loop gra-MIR8639d

Accession

MI0027858

Description

Gossypium raimondii gra-MIR8639d precursor miRNA

Gene family

MIPF0001883; MIR8639

Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaauucuuuuaagugacaaauaugaaaguuguuuuugucuaauuuuuuuuuauauuuuucaaauguuaaauauaaaagucaguuucauuacuaaaaucugguuaguauauauugaaagcuuaaaagaguuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((...)))).)))))).......(((((((((((..(....)..)))))))))))(((((.....((((((.......))))))...)))))..)))))))))))))))))))))))))))))))))))))))))))))))))

Structure

g                                                 -------gacaaauaugaaaguuguuuuugucuaauuuu           uu a 
 uaauggaagacuuguuuaauucuacuuauguuuaacaauucuuuuaagu                                       uuuuuauauuu  c a
 |||||||||||||||||||||||||||||||||||||||||||||||||                                       |||||||||||  |  
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguugagaaaauucg                                       gaaaauauaaa  g a
-                                                 aaaguuauauaugauuggucuaaaaucauuacuuugacu           uu u 

Annotation confidence Not enough data

Genome context

chr13: 11302130-11302331 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8639d

Mature gra-miR8639d

• Accession: MIMAT0034263
• Description: Gossypium raimondii gra-miR8639d mature miRNA
• Sequence: 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629