Stem-loop cfa-mir-1249

Accession

MI0027912

Description

Canis familiaris cfa-mir-1249 precursor miRNA

Gene family

MIPF0000667; mir-1249

Sequence

ucccagcucgccuuguccucagauucuuguuugcauggggaggagggaggagaggggccaaguucccuccgccuggaACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagacccagcucaag
....((((...((((......((.....((((((..(((((((((((.((.(((((((...(((((........)))))))))))).))))))))))).))..))))))......))......))))....))))....

Structure

uccc    -cgc    uccuca  -uucuu      au  -         a  a       caa     cuc 
    agcu    cuug      ga      guuugc  gg ggaggaggg gg gaggggc   guucc   c
    ||||    ||||      ||      ||||||  || ||||||||| || |||||||   |||||    
    ucga    gaac      cu      caagcg  cc CUUCUUCCC CC CUUCCCG   CAagg   g
gaac    ccca    uuccug  cauccu      gu  A         -  C       ---     ucc 

Annotation confidence Not enough data

Genome context

chr10: 20818801-20818939 [+]

Mature cfa-miR-1249

• Accession: MIMAT0034321
• Description: Canis familiaris cfa-miR-1249 mature miRNA
• Sequence: 78 - ACGCCCUUCCCCCCCUUCUUCA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545