Stem-loop cfa-mir-1301

Accession

MI0027930

Description

Canis familiaris cfa-mir-1301 precursor miRNA

Gene family

MIPF0000742; mir-1301

Sequence

gaacucugcuaagcgaccccuagaauggggcuuguggggggucacucugggcaccgcaacacugugcuagggaugUUGCAGCUGCCUGGGAGUGACUUCAcacaguccucucugccucaagggucacccagaaca
....((((....(.(((((.((((..((((((.(((.(((((((((((.(((((.((((((((.......)).)))))).).))))..))))))))))).))))))))).))))......))))).).))))...

Structure

gaac    cuaa c     -----c    au      u   g           -g    - c      -  gu 
    ucug    g gaccc      uaga  ggggcu gug ggggucacucu  ggca c gcaaca cu  g
    ||||    | |||||      ||||  |||||| ||| |||||||||||  |||| | |||||| ||  c
    agac    c cuggg      gucu  uccuga cac CUUCAGUGAGG  CCGU G CGUUgu gg  u
-aca    ---c a     aacucc    -c      -   A           GU    C A      a  ga 

Annotation confidence Not enough data

Genome context

chr17: 19575798-19575932 [-]

Mature cfa-miR-1301

• Accession: MIMAT0034337
• Description: Canis familiaris cfa-miR-1301 mature miRNA
• Sequence: 76 - UUGCAGCUGCCUGGGAGUGACUUCA - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545