Stem-loop sequence cfa-mir-889

AccessionMI0027984 (change log)
DescriptionCanis familiaris miR-889 stem-loop
Gene family MIPF0000514; mir-889
Stem-loop 
   -caa   cuucu    -gg  c   -ucu    -    u   g            uagua     u    a 
5'     gcu     ggau   ug agu    uugg ugcu aaa aaugguuguccg     ugguc cuau u
       |||     ||||   || |||    |||| |||| ||| ||||||||||||     ||||| ||||  
3'     cga     cuug   ac ucg    aacc auga uuu uuaccaacaggc     auuag ggua u
   cgca   acccu    aaa  u   uuuc    u    u   g            -uaua     u    c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (CanFam3.1; GCA_000002285.2) Overlapping transcripts
chr8: 69276842-69276980 [+]
intergenic
Clustered miRNAs
< 10kb from cfa-mir-889
cfa-mir-3958chr8: 69267134-69267274 [+]
cfa-mir-376a-3chr8: 69269752-69269810 [+]
cfa-mir-376cchr8: 69270100-69270185 [+]
cfa-mir-376a-2chr8: 69270499-69270556 [+]
cfa-mir-376bchr8: 69270858-69270956 [+]
cfa-mir-376a-1chr8: 69271259-69271316 [+]
cfa-mir-300chr8: 69271815-69271892 [+]
cfa-mir-1185chr8: 69273204-69273332 [+]
cfa-mir-381chr8: 69274983-69275057 [+]
cfa-mir-487bchr8: 69275496-69275553 [+]
cfa-mir-539chr8: 69276311-69276386 [+]
cfa-mir-889chr8: 69276842-69276980 [+]
cfa-mir-544chr8: 69277656-69277744 [+]
cfa-mir-487achr8: 69281078-69281157 [+]
cfa-mir-382chr8: 69283123-69283179 [+]
cfa-mir-134chr8: 69283496-69283568 [+]
cfa-mir-485chr8: 69284239-69284297 [+]
Database links

Mature sequence cfa-miR-889

Accession MIMAT0034387
Sequence

78 -  

uuaauaucggacaaccauuguu

 - 99

Get sequence
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).