Stem-loop cfa-mir-8890

Accession

MI0027995

Description

Canis familiaris cfa-mir-8890 precursor miRNA

Sequence

aacgugagccgaaaucaagaguuggacguuuagcuGACUGAGCCACCUAGGUACCCCUUAagauuuuauuuuuagggugcuuggguggcucagucgguuaagugucugcuuucagcucaggucaugaucccaggg
.((.(((((.((......((((.(((((((((((((((((((((((((((((((((..(((((......)))))))))))))))))))))))))))))))))))))))))))).))))).)).............

Structure

------------a  g     c  aaucaa    u                                 CU     uu 
             ac ugagc ga      gagu ggacguuuagcuGACUGAGCCACCUAGGUACCC  UAaga  u
             || ||||| ||      |||| |||||||||||||||||||||||||||||||||  |||||   
             ug acucg cu      uucg ucugugaauuggcugacucgguggguucguggg  auuuu  u
gggacccuaguac  g     a  ------    -                                 --     ua 

Annotation confidence Not enough data

Genome context

chr1: 107121560-107121694 [+]

Mature cfa-miR-8890

• Accession: MIMAT0034397
• Description: Canis familiaris cfa-miR-8890 mature miRNA
• Sequence: 36 - GACUGAGCCACCUAGGUACCCCUUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545