miRBase entry: cfa-mir-506

Stem-loop cfa-mir-506

Accession

MI0028024

Description

Canis familiaris cfa-mir-506 precursor miRNA

Gene family

MIPF0000130; mir-506

Sequence

gccugcugccuucggcuuaucuguguucagugcccUACUCAGGGAGGCGUCAUUCACAUAaguugauauaugaauggcaccuuuuugaguaggguaauguacaaugaggacaacauuugugguggcauuggcaau
((((((((((.....(((((.((((..((.(((((((((((((((((.((((((((.(((......))).)))))))).))))))))))))))))).))))))))))).((((...)))))))))))..)))...

Structure

---   --       -------uucgg     c    uu  g                 C        C   ag 
   gcc  ugcugcc            cuuau ugug  ca ugcccUACUCAGGGAGG GUCAUUCA AUA  u
   |||  |||||||            ||||| ||||  || ||||||||||||||||| |||||||| |||   
   cgg  acggugg            gagua acau  gu augggaugaguuuuucc cgguaagu uau  u
uaa   uu       uguuuacaacag     -    --  a                 a        a   ag

Annotation confidence Not enough data

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Genome context

chrX: 115652383-115652517 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-506

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-506

Accession	MIMAT0034422
Description	Canis familiaris cfa-miR-506 mature miRNA
Sequence	36 - UACUCAGGGAGGCGUCAUUCACAUA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545