Stem-loop cfa-mir-8908a-4

Accession

MI0028039

Description

Canis familiaris cfa-mir-8908a-4 precursor miRNA

Gene family

MIPF0001890; mir-8908

Sequence

uggacaacauccgucuucccacauacugugugcagugcucUGCUGAGGAAGGUGCUCAUUGCAUUcauuuauaagagUAAUUAGGACCUCCCUGAGCGGAGUaaugcucacuuaaaguacgucugcggugucuuccagagcggug
((((..(((.((((......((.(((((((.(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).))).)))....)))).))..)))))))..))))........

Structure

--------    ca   u    cuuccc  a    ----   u   g         G   A    G  C     AU  auu 
        ugga  aca ccgu      ac uacu    gug gca ugcucUGCU AGG AGGU CU AUUGC  Uc   u
        ||||  ||| ||||      || ||||    ||| ||| ||||||||| ||| |||| || |||||  ||    
        accu  ugu ggcg      ug auga    cac cgu aUGAGGCGA UCC UCCA GA UAAUg  ag   a
guggcgag    uc   -    ----uc  c    aauu   u   a         G   C    G  U     --  aau 

Annotation confidence Not enough data

Genome context

chrX: 114680866-114681010 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from cfa-mir-8908a-4

Mature cfa-miR-8908a-5p

• Accession: MIMAT0034428
• Description: Canis familiaris cfa-miR-8908a-5p mature miRNA
• Sequence: 41 - UGCUGAGGAAGGUGCUCAUUGCAUU - 65
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908a-3p

• Accession: MIMAT0034429
• Description: Canis familiaris cfa-miR-8908a-3p mature miRNA
• Sequence: 78 - UAAUUAGGACCUCCCUGAGCGGAGU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545