miRBase entry: eca-mir-8929-1

Stem-loop eca-mir-8929-1


Accession
MI0028064
Description
Equus caballus eca-mir-8929-1 precursor miRNA
Gene family
MIPF0002052; mir-8929


Sequence

167 reads, 0 reads per million, 1 experiments
ggcucuggcauccucccgggggccugaguccugcaUGCUGGAGAAUUUGCCCAUGUCCCCgggcccauggucaggaggggagggacgggggcugcagcaguccagcccucucuuggucccauggaggggcaggga
..(((((.(..(((((..((((((.(((..(((..(((((.((..(((((((.(.(((((.((((...)))).)).))).)))).))))..)).)))))...)))....)))..))))))..)))))).))))).

Structure
gg     g au     cg      -u   --uc   -ca     G  AA    -   A G   -  g    c 
  cucug c  ccucc  ggggcc  gag    cug   UGCUG AG  UUUG CCC U UCC CC ggcc  
  ||||| |  |||||  ||||||  |||    |||   ||||| ||  |||| ||| | ||| || |||| a
  gggac g  ggagg  cccugg  cuc    gac   acgac uc  gggc ggg a ggg gg cugg  
-a     g --     ua      uu   uccc   cug     g  gg    a   - g   a  a    u 


Annotation confidence Not enough data
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Genome context
NW_001867908.1: 161839-161973 [+]

Database links

Mature eca-miR-8929

Accession MIMAT0034457
Description Equus caballus eca-miR-8929 mature miRNA
Sequence 36 - UGCUGGAGAAUUUGCCCAUGUCCCC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545