miRBase entry: eca-mir-9028

Stem-loop eca-mir-9028


Accession
MI0028192
Description
Equus caballus eca-mir-9028 precursor miRNA


Sequence

3 reads, 0 reads per million, 1 experiments
caggauccuggcuucauggccccagggauauaaugcaaggcuccagcugguuaauugcuuccccaccaggaaggauguUUUGCCGGACUAGGCCCGCGUGCacgucccuggggaucagcguggaggagcagagccugcagc
((((.(.(((.(((((((.((((((((((...((((..((((..(((((((.((((.(((((......))))).).)))..))))).)).)))).))))....)))))))))).....)))))))...))).)))))....

Structure
----    a c   --g       ----g          -aua    aa    cc  -     -u   - g     cc 
    cagg u cug   cuucaug     ccccagggau    augc  ggcu  ag cuggu  aau u cuucc  a
    |||| | |||   |||||||     ||||||||||    ||||  ||||  || |||||  ||| | |||||   
    gucc g gac   gaggugc     ggggucccug    UGCG  CCGG  UC GGCCG  Uug a gaagg  c
cgac    - a   gag       gacua          caCG    -C    -A  A     UU   u g     ac 


Annotation confidence Not enough data
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Genome context
chr26: 39658781-39658921 [-]

Database links

Mature eca-miR-9028

Accession MIMAT0034570
Description Equus caballus eca-miR-9028 mature miRNA
Sequence 79 - UUUGCCGGACUAGGCCCGCGUGC - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545