Stem-loop eca-mir-9045

Accession

MI0028212

Description

Equus caballus eca-mir-9045 precursor miRNA

Sequence

27 reads, 4 reads per million, 1 experiments

gcaacacucugggugcccacuucuaacucuacugcaugucagcuggaauuggccaauggugugcugguagcuucuGAGCAGCAUGCUAGGUACCAAGUUGggcaguagucuuguucuugcugugggugggagcug
......((((...(((((((..((((..(((((((...((((((((.....(((..((((((((((.(........).))))))))))))).)).)))))))))))))..))).....)..)))))))))))...

Structure

gcaaca    ggg       uu -----   cu       aug      -  aauug   aa          g agc 
      cucu   ugcccac  c     uaa  cuacugc   ucagcu gg     gcc  uggugugcug u   u
      ||||   |||||||  |     |||  |||||||   |||||| ||     |||  |||||||||| |    
      gagg   gugggug  g     guu  gaugacg   gGUUGA CC     UGG  AUCGUACGAC A   u
---guc    ---       uc uucuu   cu       ---      A  ----A   --          G Guc 

Annotation confidence Not enough data

Genome context

chr1: 108538275-108538409 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-9045

Mature eca-miR-9045

• Accession: MIMAT0034588
• Description: Equus caballus eca-miR-9045 mature miRNA
• Sequence: 76 - GAGCAGCAUGCUAGGUACCAAGUUG - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545