miRBase entry: eca-mir-372

Stem-loop eca-mir-372


Accession
MI0028267
Description
Equus caballus eca-mir-372 precursor miRNA
Gene family
MIPF0000068; mir-290


Sequence

4 reads, 1 reads per million, 1 experiments
ccucugggcaaaggucccgggucagcugcucagccugcgggacucaaauguggaagcacucuucgaacaucgggauggAAAGUGCUGCGACAUUUGAGUGUcgccggugggcacccuccacggaacccaagcuguucuaga
..(((((((...(((.(((((...(.((((((.((.((((.((((((((((.(.((((((.((((..(....)..)))).)))))).).)))))))))).)))).)))))))))...)).))).)))...))....)))))

Structure
cc     ----  aaa   c   -  uca c      g  u    g          g a      c    aa a 
  ucugg    gc   ggu ccg gg   g ugcuca cc gcgg acucaaaugu g agcacu uucg  c u
  |||||    ||   ||| ||| ||   | |||||| || |||| |||||||||| | |||||| ||||  |  
  agauc    cg   cca ggc cc   c acgggu gg cgcU UGAGUUUACA C UCGUGA Aggu  g c
--     uugu  aac   a   a  ucc -      -  c    G          G G      A    ag g 


Annotation confidence Not enough data
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Genome context
chr10: 22832128-22832268 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-372
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-372

Accession MIMAT0034639
Description Equus caballus eca-miR-372 mature miRNA
Sequence 79 - AAAGUGCUGCGACAUUUGAGUGU - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545