miRBase entry: eca-mir-9139

Stem-loop eca-mir-9139


Accession
MI0028322
Description
Equus caballus eca-mir-9139 precursor miRNA


Sequence

3 reads, 0 reads per million, 1 experiments
cgagauggggcuggcugaguggggggcaggcucuagguuggccagcuaccuuggcacuggacucugagcuggacccaagcUAACUAGACCCAGGACGGCCAAGGCccagacuuuugcuucuuccccagcaauucccauuucugaa
.(((((((((...((((...((((((.((((...(((((((((.(((..(((((..((((......((((.......))))..))))..)))))..)))...))))..)))))..))))))))))))))...)))))))))....

Structure
---c         cug    agu      c    ucu     --    --a   ac     ca    acucug    gg 
    gagaugggg   gcug   gggggg aggc   agguu  ggcc   gcu  cuugg  cugg      agcu  a
    |||||||||   ||||   |||||| ||||   |||||  ||||   |||  |||||  ||||      ||||  c
    cuuuacccu   cgac   cccuuc uucg   uucag  cCGG   CGG  GGACC  GAUC      Ucga  c
aagu         uaa    ---      -    -uu     ac    AAC   CA     CA    ----AA    ac 


Annotation confidence Not enough data
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Genome context
chr13: 22434181-22434325 [+]

Database links

Mature eca-miR-9139

Accession MIMAT0034690
Description Equus caballus eca-miR-9139 mature miRNA
Sequence 81 - UAACUAGACCCAGGACGGCCAAGGC - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545