Stem-loop sequence eca-mir-8908n

Accession

MI0028339 (change log)

Description

Equus caballus miR-8908n stem-loop

Gene family

MIPF0001890; mir-8908

Stem-loop

   -gg   a  ----       --u    cca    --g  u   g   c            a   u   ca    uac 
5'    cag ga    agccacc   gaag   ugcu   ug gca ugc cuauuuaggaag cgc auu  caua   u
      ||| ||    |||||||   ||||   ||||   || ||| ||| |||||||||||| ||| |||  ||||    
3'    guc cu    ucggugg   cuuc   auga   ac cgu aug gauaagucuuuc gug uga  guau   g
   gga   c  gaag       ugu    aac    gca  u   a   c            c   -   -a    uau 

Deep sequencing

1307 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 116796896-116797040 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-8908n

• eca-mir-514b: chrX: 116800086-116800180 [-]
• eca-mir-8908n: chrX: 116796896-116797040 [-]
• eca-mir-514: chrX: 116793914-116794002 [-]
• eca-mir-509a: chrX: 116788793-116788890 [-]

Database links

• miRBase Tracker:MI0028339

Mature sequence eca-miR-8908n

• Accession: MIMAT0034703
• Sequence: 41 - uauuuaggaagacgcuauucacaua - 65
• Deep sequencing: 182 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).