miRBase entry: eca-mir-8908d-2

Stem-loop eca-mir-8908d-2


Accession
MI0028340
Description
Equus caballus eca-mir-8908d-2 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

82 reads, 12 reads per million, 1 experiments
ugggcagauacuccauuuugauccauucugugugcagugcccuacccagcaagguacugaucacuuagacgagguauGAUCAGUGCCUGUCUGGGUGGAguaaugcucaacaagaacaacauuugggagggucuucaga
..((.((((.((((....((.....(((((((.(((.(((.((((((((..(((((((((((((((....)))...))))))))))))..)))))))).))).))).).)).))))...))....)))).))))))...

Structure
-ug  c    a    auuu  aucca    -  - u   g   c        ca            ---   a 
   gg agau cucc    ug     uucu gu g gca ugc cuacccag  agguacugauca   cuu g
   || |||| ||||    ||     |||| || | ||| ||| ||||||||  ||||||||||||   |||  
   cu ucug gagg    ac     aaga ca c cgu aug GGUGGGUC  UCCGUGACUAGu   gag a
aga  -    g    guuu  --aac    a  a u   a   A        UG            aug   c 


Annotation confidence Not enough data
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Genome context
chrX: 115854275-115854413 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from eca-mir-8908d-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908d

Accession MIMAT0034698
Description Equus caballus eca-miR-8908d mature miRNA
Sequence 78 - GAUCAGUGCCUGUCUGGGUGGA - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545