miRBase entry: eca-mir-506a

Stem-loop eca-mir-506a


Accession
MI0028345
Description
Equus caballus eca-mir-506a precursor miRNA
Gene family
MIPF0000130; mir-506

Literature search
1 open access papers mention eca-mir-506a
(1 sentences)

Sequence

9765 reads, 1478 reads per million, 1 experiments
aaaaagguuaagaaugucaccuucagcuacguuuguucagugccuuacucagggaggcguuguucacauagauugguauaUGAAUGGCACCUUUCUGAGUAGAGUaaugugcaacauggacaacguuuguggugguacuuguaau
......((((.((.(((((((..(((..(((((.(((((((((((((((((((((((.((((((((.(((......))).)))))))).)))))))))))))......).)).)).))))))))))))).))))))).)).))))

Structure
aaaaag    a  a       uu   cu     u     -  -  - ------             c        c   ga 
      guua ga ugucacc  cag  acguu guuca gu gc c      uuacucagggagg guuguuca aua  u
      |||| || |||||||  |||  ||||| ||||| || || |      ||||||||||||| |||||||| |||   
      uaau uu auggugg  guu  ugcaa caggu ca cg g      GAUGAGUCUUUCC CGGUAAGU uau  u
------    g  c       -u   --     -     a  a  u uaaUGA             A        a   gg 


Annotation confidence High
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Genome context
chrX: 116755599-116755743 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-506a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-506a

Accession MIMAT0034707
Description Equus caballus eca-miR-506a mature miRNA
Sequence 81 - UGAAUGGCACCUUUCUGAGUAGAGU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545