Stem-loop eca-mir-514a

Accession

MI0028357

Description

Equus caballus eca-mir-514a precursor miRNA

Sequence

3907 reads, 591 reads per million, 1 experiments

gcugugugcauuaccUCACUCCGGAAAGUGUCAAUCAUGUauaacuaaauaugauugacaccucugugaguggaguaacgccagcuauaugcaac
((((.(((..((((.((((((((((..(((((((((((((........))))))))))))).)))).)))))).)))))))))))..........

Structure

----------    u   ca    c      -    AA             aua 
          gcug gug  uuac UCACUC CGGA  GUGUCAAUCAUGU   a
          |||| |||  |||| |||||| ||||  |||||||||||||    
          cgac cgc  aaug ggugag gucu  cacaguuaguaua   c
caacguauau    -   --    a      u    -c             aau 

Annotation confidence Low

Genome context

chrX: 116750733-116750827 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-514a

Mature eca-miR-514a

• Accession: MIMAT0034715
• Description: Equus caballus eca-miR-514a mature miRNA
• Sequence: 16 - UCACUCCGGAAAGUGUCAAUCAUGU - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545