miRBase entry: eca-mir-425

Stem-loop eca-mir-425


Accession
MI0028397
Description
Equus caballus eca-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425

Literature search
1 open access papers mention eca-mir-425
(1 sentences)

Sequence

876 reads, 133 reads per million, 1 experiments
guccccgggucgugcgccugcggcauggaaagcgcuuuggaaugacacgaucacucccguugagugggcacacaagaagCCAUCGGGAAUAUCGUGUCCGCCCagugcucuuucggcgccucccagcaggaccuugaggcccu
(((.(.(((((.(((....(.(((.(.(((((.((.((((...((((((((...(((((....((((............)))))))))..))))))))...)))).)).))))).).))).)...))).))))).).)))...

Structure
---   c c     g   gccu c   a g     c  u    aau        cac     uuga    gcaca 
   guc c ggguc ugc    g ggc u gaaag gc uugg   gacacgau   ucccg    gugg     c
   ||| | ||||| |||    | ||| | ||||| || ||||   ||||||||   |||||    ||||      
   cgg g uccag acg    c ccg g cuuuc cg gaCC   CUGUGCUA   AGGGC    UACC     a
ucc   a u     g   -acc u   c g     u  u    CGC        -UA     ----    gaaga 


Annotation confidence Not enough data
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Genome context
chr16: 38001590-38001732 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-425

Accession MIMAT0034749
Description Equus caballus eca-miR-425 mature miRNA
Sequence 80 - CCAUCGGGAAUAUCGUGUCCGCCC - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545