miRBase entry: efu-mir-199-1

Stem-loop efu-mir-199-1

Accession

MI0028769

Description

Eptesicus fuscus efu-mir-199-1 precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

gccccgucggcccaguguucagacuaccuguucaggacaaugccguugUACAGUAGUCUGCACAUUGGUUAgacugggcaa
((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).))))..

Structure

--    c   ggc       u        c   u  --  ac 
  gccc guc   ccagugu cagacuac ugu ca  gg  a
  |||| |||   ||||||| |||||||| ||| ||  ||   
  cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
aa    u   AUU       C        -   U  ug  gu

Annotation confidence Not enough data

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Genome context

JH977644.1: 1291613-1291693 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-199-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-199

Accession	MIMAT0034946
Description	Eptesicus fuscus efu-miR-199 mature miRNA
Sequence	49 - UACAGUAGUCUGCACAUUGGUUA - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545