miRBase entry: efu-mir-27a

Stem-loop efu-mir-27a


Accession
MI0028869
Description
Eptesicus fuscus efu-mir-27a precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

1 reads, 1292 reads per million, 1 experiments
ccuggggagcAGGGCUUAGCUGCUUGUGAGCAGGGucugcaccaagucauguucacaguggcuaaguuccgccccccggagc
.((((((.((.(((((((((((((.(((((((.((.((......)))).)))))))))))))))))))).)).))))))...

Structure
--c      a  A             U       G  u  gc 
   cugggg gc GGGCUUAGCUGCU GUGAGCA GG cu  a
   |||||| || ||||||||||||| ||||||| || ||   
   ggcccc cg cuugaaucgguga cacuugu cu ga  c
cga      c  c             -       a  -  ac 


Annotation confidence Not enough data
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Genome context
JH977789.1: 1180697-1180778 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-27a

Accession MIMAT0035162
Description Eptesicus fuscus efu-miR-27a mature miRNA
Sequence 11 - AGGGCUUAGCUGCUUGUGAGCAGGG - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545