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miRBase |
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Stem-loop sequence sly-MIR9471b |
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Accession | MI0029104 (change log) | |||||
Description | Solanum lycopersicum miR9471b stem-loop | |||||
Gene family | MIPF0002045; MIR9471 | |||||
Literature search |
3 open access papers mention sly-MIR9471b | |||||
Stem-loop |
gaaaugauuuugugaaaaaaaauuggaucuuugacugauuugggg g u - u a ug aa c auaa gg ag 5' uuuu aga uca guugauuuc g ggugcucacucagcuaauaguuau uuu gaaa uca uauu c c |||| ||| ||| ||||||||| | |||||||||||||||||||||||| ||| |||| ||| |||| | 3' gaga ucu agu cagcuaaag c cuacgagugagucgguuaucaaua agg cuuu agu guaa g a -uuuuguuaaaaaaauuauuuauguagaaaguuagucaguaaaag g u a u a gu -a c ---g ga ga |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence sly-miR9471b-5p |
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Accession | MIMAT0035441 |
Sequence |
68 - gaggugcucacucagcuaaua - 88 |
Evidence | experimental; Illumina [1] |
Mature sequence sly-miR9471b-3p |
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Accession | MIMAT0035442 |
Sequence |
155 - uuggcugagugagcaucacug - 175 |
Evidence | experimental; Illumina [1] |
References |
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1 |
PMID:24376253
"Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant"
J Exp Bot. 65:725-739(2014).
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