Stem-loop bdi-MIR166j

Accession

MI0029154

Description

Brachypodium distachyon bdi-MIR166j precursor miRNA

Literature search

2 open access papers mention bdi-MIR166j
(20 sentences)

Sequence

2650141 reads, 39173.0 reads per million, 21 experiments

gauuggaggcgUCGGACCAGGCUUCAUUCCUUguaaaccgaugcauccauggcgucuacauacacauagauguagguuuccuguuaguuaaucgcguggcaugccaggauuagguuaaggGGUUUGUUGUCUGGCUCGGGGcucccggucuu
((((((.(((.((((.((((((..((..((((...((((.....((((.((((((((((.............((((...))))............)))).))))))))))..))))..))))..))..)))))).)))).))).))))))..

Structure

--      a   g    A      UU  UU    gua    gaugc    a      -    auacacauagaug    u 
  gauugg ggc UCGG CCAGGC  CA  CCUU   aacc     aucc uggcgu cuac             uagg  
  |||||| ||| |||| ||||||  ||  ||||   ||||     |||| |||||| ||||             |||| u
  cuggcc ucG GGCU GGUCUG  GU  GGgg   uugg     uagg accgua ggug             gucc  
uu      c   G    C      UU  UU    -aa    ---au    -      c    -cgcuaauugauu    u 

Annotation confidence High

Genome context

Unknown

Mature bdi-miR166j-5p

• Accession: MIMAT0035512
• Description: Brachypodium distachyon bdi-miR166j-5p mature miRNA
• Sequence: 12 - UCGGACCAGGCUUCAUUCCUU - 32
• Evidence: not_experimental

Mature bdi-miR166j-3p

• Accession: MIMAT0057039
• Description: Brachypodium distachyon bdi-miR166j-3p mature miRNA
• Sequence: 121 - GGUUUGUUGUCUGGCUCGGGG - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145