Stem-loop bdi-MIR167g

Accession

MI0029156

Description

Brachypodium distachyon bdi-MIR167g precursor miRNA

Literature search

2 open access papers mention bdi-MIR167g
(7 sentences)

Sequence

1660614 reads, 31024.0 reads per million, 21 experiments

cuugugcgccacaaguagaUGAAGCUGCCAGCAUGAUCUGAacuccacgcaccacauguguaucuuggugcuguguacucgaucuucagauugauuacaugcacgcaugagaaacugugcaggcgaucugcAGAUCAUCUGGCAGCUUCAUUUucucauggcagcacaccggcc
..(((((((((..((.(((((((((((((((.((((((((.......(((..((((.((...((.((((((.(((((.((((((....)))))).))))))))).)).))...))))))...))).....))))))))))))))))))))))).))..)))).)))))......

Structure

----cu     -    ca  u               C        Aacucca   -ac    u  gua  u  -    u     c      u 
      ugugc gcca  ag agaUGAAGCUGCCAG AUGAUCUG       cgc   caca gu   uc ug gugc gugua ucgauc u
      ||||| ||||  || ||||||||||||||| ||||||||       |||   |||| ||   || || |||| ||||| ||||||  
      acacg cggu  uc UUUACUUCGACGGUC UACUAGAc       gcg   gugu ca   ag ac cacg uacau aguuag c
ccggcc     a    ac  u               -        --gucua   gac    -  aag  u  g    -     u      a 

Annotation confidence High

Genome context

1: 71590930-71591103 [-]

Mature bdi-miR167g-5p

• Accession: MIMAT0035514
• Description: Brachypodium distachyon bdi-miR167g-5p mature miRNA
• Sequence: 20 - UGAAGCUGCCAGCAUGAUCUGA - 41
• Evidence: not_experimental

Mature bdi-miR167g-3p

• Accession: MIMAT0057041
• Description: Brachypodium distachyon bdi-miR167g-3p mature miRNA
• Sequence: 132 - AGAUCAUCUGGCAGCUUCAUUU - 153
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145