Stem-loop bdi-MIR2275c

Accession

MI0029177

Description

Brachypodium distachyon bdi-MIR2275c precursor miRNA

Gene family

MIPF0000797; MIR2275

Literature search

2 open access papers mention bdi-MIR2275c
(5 sentences)

Sequence

cugggaagcugaaugugagauuuggauggaaccaaaucuucagcugcauuggcacaagaUUUGGUUUCCUCCAAUAUCUCAccuucaacugccccag
(((((.((.((((.((((((((((((.(((((((((((((..(((.....)))..))))))))))))).))))).))))))).)))).))..)))))

Structure

     -a  c    u       -     u             ca   g 
cuggg  ag ugaa gugagau uugga ggaaccaaaucuu  gcu c
|||||  || |||| ||||||| ||||| |||||||||||||  ||| a
gaccc  uc acuu cACUCUA AACCU CUUUGGUUUagaa  cgg u
     cg  a    c       U     C             ca   u 

Annotation confidence Not enough data

Genome context

3: 12514129-12514225 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR2275c

Mature bdi-miR2275c

• Accession: MIMAT0035535
• Description: Brachypodium distachyon bdi-miR2275c mature miRNA
• Sequence: 60 - UUUGGUUUCCUCCAAUAUCUCA - 81
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145