Stem-loop dvi-mir-976

Accession

MI0029264

Description

Drosophila virilis dvi-mir-976 precursor miRNA

Sequence

uucuuuggugcagccccucgCGAUUGAUGAUAGCAUCUCCAaugagcauaucacauUGGAUUAGUUCUCAUCGAUGCCgaugcgcuguaccag
.....(((((((((.(.(((..((((((((.(((...(((((((.........)))))))...))).))))))))..))).).))))))))).

Structure

uucuu         c c   CG        U   AUC       agc 
     uggugcagc c ucg  AUUGAUGA AGC   UCCAaug   a
     ||||||||| | |||  |||||||| |||   |||||||   u
     accaugucg g agC  UAGCUACU UUG   AGGUuac   a
----g         c u   CG        C   AUU       acu 

Annotation confidence Not enough data

Genome context

scaffold_13042: 906737-906829 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from dvi-mir-976

Mature dvi-miR-976-3p

• Accession: MIMAT0035594
• Description: Drosophila virilis dvi-miR-976-3p mature miRNA
• Sequence: 57 - UGGAUUAGUUCUCAUCGAUGCC - 78
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-976-5p

• Accession: MIMAT0037535
• Description: Drosophila virilis dvi-miR-976-5p mature miRNA
• Sequence: 21 - CGAUUGAUGAUAGCAUCUCCA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250